Scaffold Ga0210388_10006219

Overview

Basic Information

• Taxon OID: 3300021181
• Scaffold ID: Ga0210388_10006219
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9368
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000072	Metagenome / Metatranscriptome	2651	Y
F013210	Metagenome / Metatranscriptome	273	Y
F015370	Metagenome / Metatranscriptome	255	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210388_100062194	F013210	GAGG	MKDSSVESIPERGRILNAVGLQNAVLCAECDVISDSPHDRCLVCGSRSLFNIARMFGGNLPRDRAALAPSEILELQRERVLTFPGHHRRRAKAMG
Ga0210388_100062196	F000072	GAG	MDADQTIAEIECLERIFDVRDTRPLGPSDLAAANRRHDEMLEQSPWFRLWQQYGVCCRSEAEGGLRIQS
Ga0210388_100062198	F015370	GGAGG	MLNVTVANMGELAVVSCEGRIVQRQAASRLREAVTSQADAQIVVLELSEVRAIGGGGLGMLVFLQRWAREHKIRFLLFHPSMSVLSRLKRARSIAKFYIASSEEISAILAYANSRYALAA