Scaffold Ga0210388_10000002

Overview

Basic Information

• Taxon OID: 3300021181
• Scaffold ID: Ga0210388_10000002
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1246796
• Total Scaffold Genes: 1172
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 889 (75.85%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000072	Metagenome / Metatranscriptome	2651	Y
F000410	Metagenome / Metatranscriptome	1170	Y
F004586	Metagenome / Metatranscriptome	432	Y
F005890	Metagenome / Metatranscriptome	387	Y
F005986	Metagenome / Metatranscriptome	384	Y
F006807	Metagenome / Metatranscriptome	364	Y
F023438	Metagenome / Metatranscriptome	210	Y
F033152	Metagenome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210388_100000021099	F033152	GGAG	LPPSNPSAFKATLTGKSVIVKISLFSRAFSGTIIAVDEIGFCFVSEAMIAALRETTGSAMANLDAPSVYLTFASLEWLVSSQPKAAAASA
Ga0210388_10000002182	F005890	GAGG	MSFDATNPASFSYLSSCAVESANKSLSTRNYGGELRPSYGGPCRSNRTASAVNFRSQCADENFVLERACRCVSRLLLGHSFGAFPAPGGTRSSASRCAPLRGPGSSQNKFENHGKEHLSNFFRAPPRKQTFGTWEPGPLAKLRPV
Ga0210388_10000002186	F006807	AGGAGG	MRRIIVAVALLSTLILFSCKKQIACDPADSEAVCKAFQQCLHSDTSAEVCRMGEQDANKLEKNKKH
Ga0210388_10000002363	F000410	GAGG	MTRKLIWIERQRFRGFGCSECAWVFNSSSTPAGKSFDEMMGNFELQRDREFTSHVCSDRPASKSARSKNRPPAQ
Ga0210388_10000002376	F023438	N/A	MFNTIVVKSEKLTLKQILSVRCPMCGAKPKGKCTASTGHPSAKTHLDRDLAAAKHARPESSGEAALRILKAITSRGLRLLTQHK
Ga0210388_10000002690	F005986	AGAAG	MRRSLTIAVILVATVLNCVAEKETVQQLAARAEAGRPEDRPGLYIEIAERQLKAVAELFGTGKDDEAVAAVKDVVTYSEKAHDAAIDSRNRLKATEIAFRKMAAKLRDIKRTLSFEDQAPVQAAADRLEALRTDLLSKMFGKGK
Ga0210388_10000002976	F004586	AGGAG	MSTNDQNKCAHLPCRCSVQPGDKYCGQPCKEAGSNEVEIACQCDHGSCPLTV
Ga0210388_10000002991	F000072	N/A	MDAERTIADIELLERIFAVPDARPLSASDLWAVNRRHDEMLAHSPWFQLWQRYGVCCR