NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210396_10098657

Scaffold Ga0210396_10098657


Overview

Basic Information
Taxon OID3300021180 Open in IMG/M
Scaffold IDGa0210396_10098657 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2644
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005154Metagenome / Metatranscriptome410Y
F026990Metagenome / Metatranscriptome196Y
F044053Metagenome / Metatranscriptome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0210396_100986573F044053AGGMATTLSLRRLWTIYKRTAVPRDLSKRDLASTQLAFYSGARGVLKVLAYLIEHGDYEELHETIRRQGRQIERIRSRRPRTKSH
Ga0210396_100986574F005154AGTAGVVTGFTRLADAGYASPMGRTTGQWCCRICSFDRWHIVTVKRKNGALYTTAFYACSRCSVMFLNPDQFSAFGDAAPNVEMPTVISLPGRRK
Ga0210396_100986575F026990AGGMDIDRAMKNPGSTFGTPEALSESSELTTEEKRAVLLQLKDQLQQLQAADDEGMQQNYAAAGTTDDLLGRVTSILSRIDADMRRVSNSG

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