Scaffold Ga0210396_10029962

Overview

Basic Information

• Taxon OID: 3300021180
• Scaffold ID: Ga0210396_10029962
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5033
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000208	Metagenome / Metatranscriptome	1593	Y
F016177	Metagenome / Metatranscriptome	249	Y
F036872	Metagenome / Metatranscriptome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210396_100299622	F036872	AGGAG	MKNAHLRFGWLTYVKSTEKTTTSIKLRLDRFIGEVLPDPPRQAKAHLISVIGGDTQVAAISAAISLGDRFMVEGPGVQPIRVCLERNAQCFKGSVQLAGRKKPFRHLIALSEEFASSNVSAGSGRTLLASSEKAFIWASLAHIHGIPGVPDWAEWFAEKLNTHGAIIPALGIGCDPVIVQGEKEQLLDWLSWGVESEAIRIPAETGSIHWPSLGLKDILFHACVSSAQQVERDVGLG
Ga0210396_100299625	F000208	GAGG	MRIRVTTKADLFEKRKQQHIERGYRIEDERPIPVKGLCSFIAVSEIPHSDPVDELVAQAMKRESSLCQW
Ga0210396_100299627	F016177	N/A	LVPMGYENDCGGFGDVVLDVAARKITVERNDRFEDYTTSTYEV