Scaffold Ga0210396

Basic Information
Taxon OID	3300021180 Open in IMG/M
Scaffold ID	Ga0210396_10009804 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9032
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (78.57%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

9032

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (78.57%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001596	Metagenome / Metatranscriptome	666	Y
F006278	Metagenome / Metatranscriptome	377	Y
F006399	Metagenome / Metatranscriptome	374	Y
F036885	Metagenome	169	Y
F038890	Metagenome	165	Y
F105952	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210396_1000980410	F036885	N/A	MTDKKDRERVIAEITLSHLIRLGNEQGCPVSRQQALAFLNQEGQAFEMWKHMMQAAEEFIEGSLLQHPFRSGGHNGFASRPRQVRSVGNAAL
Ga0210396_1000980412	F038890	GGAG	MFRITSESCHAFTLAEVLILAAMNVESVRLNSEGRVGANGARGQSKYARHVVRTDVPKVPQL
Ga0210396_100098043	F105952	GGAGG	VSTRRGAANTKRADSTGTSAGQVSRERLGSTVTVVAIEQALADLGLQARLSEIVAKAQSIENGIMQSRSRRKREHAC
Ga0210396_100098046	F006399	GGAGG	MATLALNSRIQSLVTEYRVFWQFWPQFEQTHGERRLIGFEVELIGSHTSDLNHVDPACPRCRNVRAVLLSIANLVPADLALDPDSLRYNIDSHSGAILCLPALGNRSAVWVSVYLSWSRSSGQSFETDLLTEVRALLNKWGIHQR
Ga0210396_100098047	F006278	GAGG	MFRAEILWLASGPTLKLEGKLVADWAEQAKCLVTKDVLPKGLLVDLTEVSYVHSAGEQLLNWLASVGAVFIASSVYAFAICDRLRLPLMQRIVERRKRRQKRGRERSSIKHSHPVEAV
Ga0210396_100098048	F001596	AGGAG	MSWFHSSTAPVDARDHASPAEVVACFQDQGNVLSQLAFLITGDRATADQAVVEACEITLQGNSPFRDWLFEWAKAATIASAISHGTKAIRICEATYNDRRCPHVEHLSQGDVEERAARLDLILGADAQTLLAELDPLCRAVLVLRLAIRSSIQDCALRLNVSRAAVLAANCRALTWLHGGHARPVEENHDASRAV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210396_10009804

Overview

Ecosystem & Geography

Associated Families

Sequences