Scaffold Ga0210396_10003793

Overview

Basic Information

• Taxon OID: 3300021180
• Scaffold ID: Ga0210396_10003793
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14974
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (53.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002138	Metagenome / Metatranscriptome	590	Y
F071427	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210396_1000379312	F002138	N/A	VTLREFLFENFAGDLEYHPRRGILYLGLAAAALCFWIFSPPETKFSTTPLVFVLGSLTLLLKGIFLLRKSSEGLGLSALEMAELSNPSNRKGLPSIPNQAAQIVQDFGAGSLLLWPLLNVGKDIDQSWRNPPRGSVFLSGAILFILGWLIRRLTSSPPGHAPE
Ga0210396_100037938	F071427	N/A	MSLANKLRLIKAARKIGMSDADILREVLGGEYGSERRRGLVVEWGEVLGLTSSEALRLAHASGLLPSAHSPRGE