Scaffold Ga0210396_10000929

Overview

Basic Information

• Taxon OID: 3300021180
• Scaffold ID: Ga0210396_10000929
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33607
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (51.52%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000624	Metagenome / Metatranscriptome	977	Y
F000696	Metagenome / Metatranscriptome	931	Y
F000703	Metagenome / Metatranscriptome	928	Y
F000739	Metagenome / Metatranscriptome	913	Y
F000781	Metagenome / Metatranscriptome	895	Y
F003257	Metagenome / Metatranscriptome	497	Y
F006229	Metagenome / Metatranscriptome	378	Y
F006480	Metagenome / Metatranscriptome	372	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210396_1000092912	F000624	N/A	MPAHWYGILTAIITMGVQFVLFLRWLHRRMRNDEIVRAFVRDIAANHLPHIYQALHEIAKRQGIDLPETPMVRFVDLNGHRHRH
Ga0210396_1000092917	F000703	N/A	MRVREYTEHDLEALQAIHCAQGFEYTLPDLRNPLFVTKLVLAENAPAHGYQAGEELGSSHSQSGRIVGAALLRLTAEAYLLLDPTAGTPRERWQWLLALHAAAERDAWQRGLEDVHAWLPPPIAKKFGKRVERLGWLRDDAWTPYSKRLETSKLVPPERQP
Ga0210396_1000092918	F000781	N/A	MLTVSQIAPLKDRDPYLYETLTKIVASVNATSQRAGVDPSTPAPAPAPIASITVQASNGWFDISVADPSDARPGLFYFAESDTTPAFSAPRVYFMGASRNLYVQLGNQTLYWRAFSQYIGSLPSAPVTFGSPPTAVAGGGSTGPTPLPSSGSGVLPNGLLRGGNGFGVNPGSRVPKQTLL
Ga0210396_1000092921	F006229	GAG	MDKNASTAALINISTEKWPPRHRTYFGSLEVRSPKPGEPYAITTIRGCQSYIDMGDKHHMDYSITAQQVAEDIAREINGDSGEGSFHGVFVAAGPEPTEAELADARRRLEEFQRRLVAAADLEWERTKNPMFITDLERRAARQLGVEKPWLYDSKPLAECPVCAEKIKHGVAVCRSCGAILDREKAAQYGLVSSGRKERQRSQEPQIQPGTEAGK
Ga0210396_1000092926	F000696	AGGA	MPVLPGQSMPVVGSSAYNTAGQITSLVRSLLNDAQGNLFTDTVLLPYANSAYRKLQRAIGNAGGGGFIQDDVLLVVPAVAQTDTSLQVSITDATAPPNQLPTDLLVPVKIWERPNGSTDDFLEMVDLSQHGGLPSRVQDVTLSVWEWRADGIYFLGATQDTQIRLRYLKAYPDFTDATSPVLVRNSQEAIAYATAALAGWARGSPLAEKWDEAAADALEDLVSAAVRREQQSARRRRPFSARSGYTPF
Ga0210396_1000092927	F000739	N/A	MLAAAISGAAGGVLTGLAAVGIDPQHFNLQTGMGATFRIGAAAALINAVIGVAAYLQKSPLPQD
Ga0210396_100009293	F003257	AGGTGG	MQRTRYPERRRTTRLSIQIPVVVRCRLPEGETIDLKGSTYVVGANGALLLMDTPLIPGQNVRVFNEMTAESAECFVTSLREQRDRRFVGIGFANPNVDFWHIVFPKAGTRQAIRSSQTGGLVPPGFRSENPPQF
Ga0210396_1000092930	F006480	N/A	MRRTFIGGIALLLCGGISARGKSDPVMFVFLRVDPQKDIAILRPMIAPDIGVQLDSGPRELKPGTALQCASSMREHDALVENQIAKVTDLLLDCGEQKFVVKTIEFMPRTK