Scaffold Ga0210396

Basic Information
Taxon OID	3300021180 Open in IMG/M
Scaffold ID	Ga0210396_10000839 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	35634
Total Scaffold Genes	38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	26 (68.42%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

35634

Total Scaffold Genes

38 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

26 (68.42%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001772	Metagenome / Metatranscriptome	637	Y
F002014	Metagenome / Metatranscriptome	604	Y
F004564	Metagenome / Metatranscriptome	433	Y
F010121	Metagenome / Metatranscriptome	308	Y
F022277	Metagenome / Metatranscriptome	215	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210396_1000083911	F002014	N/A	MRKLRIALALGFVFITAACSPRDFLTRRLASDLIVTSDTFKSAQQFFLRTGVISNKDYLSPEYLVLQRRGWITGASSPCPPDVTPPPCWEVALTPIGVDTFHDLIPTGAADAKFFGVPVARRQLTGITGISKTGNAADVDFLWKWVPLNEVGAALYVGGVQYKATVGFRLYDDGWRIIEGSAPKSNQGLDDALKDSEPAP
Ga0210396_1000083914	F022277	AGGA	VAIPQALPARKSKRKHPMLPVLIVLFLVSYGLMCLLAVEQDRTISAQRYLIQSLLGDSSELSNLKGKLIQKHYADAQAQAKAGSRSQAQTPLTQVPSTQAPMTQAPMTQDKPEGNAQSSHNAGKPRKTVPPKPPLGISDIVDGRRIVETI
Ga0210396_1000083917	F001772	AGGAGG	MRKRILFVVGTALLFAAGYLVGNRSAAVAYAETPSRGTVPKSYGRLVTAIADQIGTGLVFEGSDGVIRFVSITGMKEGELARYDQTPTHGGIPKSYGRLVTAVVNSEGTGLIFEDSEGVIRFVTIAGKKEGELTRN
Ga0210396_100008394	F004564	N/A	MEPLKPAQPEASSRGATGLIVAVGVVVILLIALPAYRWFFLISMAIGLVVAGILFLWHKLRPIQEKDIENKRPLGLG
Ga0210396_100008399	F010121	AGGA	LWQVSEQRKKSGWLWPLGVVATGLGAAGVVIFRGCWHGKMSWPVRFQDHSYQVCLGCGIKRLFDEQAFRAYGAYSYDLNRLIAADVARTQKTHPEAEPAIHRTAS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210396_10000839

Overview

Ecosystem & Geography

Associated Families

Sequences