Scaffold Ga0210396_10000414

Overview

Basic Information

• Taxon OID: 3300021180
• Scaffold ID: Ga0210396_10000414
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 58094
• Total Scaffold Genes: 83
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 68 (81.93%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000410	Metagenome / Metatranscriptome	1170	Y
F011530	Metagenome / Metatranscriptome	290	Y
F031198	Metagenome / Metatranscriptome	183	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210396_1000041458	F000410	GAG	VNRELVWIEQERSRGWGCSECGWVFKATGALAGKSLDEMMRNFELLRDNEFILHVCADHPRAKSTKSKKSE
Ga0210396_1000041464	F031198	AGG	MAERLKTREAELTTADLASYGIPPKQPEGPKLVKGQEPETPDKAAADSKPMPLCSE
Ga0210396_1000041474	F000410	AGGAG	VSQSDPKMRMLRILVWIEEKRFRGFGCSECAWVFNASGSPTGKSFDEMMRNFESQRDAEFSSHVCADHPRKSR
Ga0210396_1000041476	F011530	GGAGG	MEEFTELMQRLLEIQSGGRRRSPQRIEEDARLMDGLQKSSLAGEPIQTVRLSQDSAERVRFKA