Scaffold Ga0210396_10000177

Overview

Basic Information

• Taxon OID: 3300021180
• Scaffold ID: Ga0210396_10000177
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 108772
• Total Scaffold Genes: 90
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 67 (74.44%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008518	Metagenome / Metatranscriptome	332	Y
F010569	Metagenome / Metatranscriptome	302	Y
F022957	Metagenome / Metatranscriptome	212	Y
F080876	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210396_1000017715	F010569	N/A	MVKASSVNATPRAPRVKLAGTVLSLVRLENGRQTRGRLHQLSITGGLLHLETPLDEGIKVEVIFHVGESTVRSKARMLFPMWATQGYLQPFEFDSLDDEDRCNLQVDLQRLLDCSAAAIVSAPAESAELPTDANQ
Ga0210396_1000017751	F022957	GAGG	MTGGRRWQILALIVMALVGVVLGVWLFRAGFTVLGCVYVTVFLWRGQQFALWLIAPSMAPSDVILPMSSRLQRFLLSIICLFGGAVSAIGVYLWRVWPEEWQAGVVFVLFGFLVLAPVTVKEIQFRRKALDLVRRLPSRPSGGDPPND
Ga0210396_1000017766	F080876	AGG	MLLNGREAILNRVQLLKAEINDIQRLNEQYSQARRTLPAQQSHAQRRGRLEQIVEELKALTNRKIQ
Ga0210396_100001779	F008518	AGG	MWMEKLAQGVLRVLTPLGPRYLNPSFAQRLYLLWIFRNFETLPVKVLSPGQQRRIEAMCARHGFVSVLEPNGLVDTPLLGTLEQRPPVASPRRPNRSVSDAVGSFATDLRQGS