Basic Information | |
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Taxon OID | 3300021180 Open in IMG/M |
Scaffold ID | Ga0210396_10000060 Open in IMG/M |
Source Dataset Name | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 219395 |
Total Scaffold Genes | 185 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 152 (82.16%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Massachusetts | |||||||
Coordinates | Lat. (o) | 42.481016 | Long. (o) | -72.178343 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F004329 | Metagenome / Metatranscriptome | 443 | Y |
F026895 | Metagenome / Metatranscriptome | 196 | Y |
F029572 | Metagenome / Metatranscriptome | 188 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0210396_100000601 | F026895 | AGGAGG | MSFLRHGEIYPCDEGAISRPRPRSSPWMSLQLAIPGRLLSSRARFRFTSRSYTAHHQPRPTMLPQRAAKCSLTDCLTRGVQS |
Ga0210396_10000060153 | F004329 | GAG | MQAIPQRAQLNRKSAMALLSATAALALCAFQFGDRYGLNNMPFAQVRDLVSDLAKARKMARQGNVELLAGETMPGRAVSLRGEVTDANCYLGSHTHAYDHAFCAKLCAAAGSPLLFISDQGGQVYLVLTEGNAVRLPDEVLDRIGVPGVMVQGKTFEAEGVRALAVEGFAP |
Ga0210396_1000006029 | F029572 | AGGAG | VLKWLGTVPAVGVCTVCNLEFKVPVTAIKRVADAQESLKVQFDQHRCKEE |
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