Scaffold Ga0210396_10000058

Overview

Basic Information

• Taxon OID: 3300021180
• Scaffold ID: Ga0210396_10000058
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 222274
• Total Scaffold Genes: 210
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 168 (80.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004942	Metagenome / Metatranscriptome	418	Y
F007603	Metagenome / Metatranscriptome	348	Y
F012272	Metagenome / Metatranscriptome	282	Y
F020987	Metagenome / Metatranscriptome	221	Y
F047772	Metagenome / Metatranscriptome	149	Y
F059481	Metagenome / Metatranscriptome	134	Y
F099783	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210396_10000058157	F047772	GGAGG	MNESKSIGRCRVLASMAMLSGAMFTILLLPAYGQQDVSPDWYDPAPNATVVHSVQPAAAVHSSQLPAAAHRYQQTVTSVSTAPDAGKLGAKHAQIQSGNNPGRKSGGSPSGELVAIASRDPR
Ga0210396_10000058160	F099783	GGAGG	VRNRYQRSYICIAFVLASALSVLAQSDRMDIQRPDDLQRKVSDDGEPQLAAMLAQPPPVAGVSGDSNLPDAPSATKPDASTADPSSPAASPAIKRESHGAPVAAQGGPLWVDRTVADRSYLALTGGMFGASVANAELTIYCLGRHPSCNDVPPSLKSRAAIYGIGIPADLGVAYLTYCLKRKHNHIWYVPAAAVTGANIFFAYHAYHWGHERSIP
Ga0210396_1000005817	F007603	GGAG	MNYSTQKWWGVAILALLCFAPCAFANSNLTMTGAGNNVMAGVYVGPYTATVNGVANTPVICDDFADDSVIGHSWNFTANNFSTLGSALWGNQTKTYEAAAWLTLQMLSLNSNSSNATQVGYLSFAIWSLFDQNALSHLNSTQLAGVDGWLIKVPGNLTPGQFANFVLLTPQGCTNGPGSCPGQEFFEVMPEGGSAAMYLLFAGLSCFAAMLFRRRQATAMRSSIG
Ga0210396_1000005824	F020987	GGA	MTNNSDYSFAIIRFNEKTYMSGGVVAVVKGTESAQKTLNDFEWCQSQEDRGSGWRYFLEETDLQPGIDPAKATRLRQLRLDLQESQAKSL
Ga0210396_1000005828	F004942	GGTGG	MSDKVFGLSVNQVMAYAAIANVTLVLVLTTINIYYAWLAKRQADASSAQVDSSNRQREIAAETLSILRKQIEQQRTADLATVGLQLKVAIHTIEDWLKRIGSVAFPQLPDEIRILPTDFGIATQRANAIDPIVAENMGAAALYAGEAETNIRILRSGNPAKPESWKEMQDKATNNLNIAKYKLNVARTRWESTNA
Ga0210396_100000583	F059481	GGAGG	MATGAVTAREPKVDVKAETTQSSEAQPLTVKQRFIHLLHEIFKGHEEHLGWRQ
Ga0210396_1000005834	F012272	N/A	MKKDTRLTFRVNSHVKRDVEAIAAREGQSVARICEAFLLAGSDAYKKQGSKFLERMLGRVGTKPAD