Scaffold Ga0210396_10000034

Overview

Basic Information

• Taxon OID: 3300021180
• Scaffold ID: Ga0210396_10000034
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 316532
• Total Scaffold Genes: 308
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 245 (79.55%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018971	Metagenome / Metatranscriptome	232	Y
F028255	Metagenome / Metatranscriptome	192	Y
F029492	Metagenome / Metatranscriptome	188	Y
F067943	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210396_10000034105	F067943	GAGG	MPALNYVSQTPNGVSVTYTDMPAGATVVFVNKVSGKNTPAPGNALSKGGSGSTEISSSGISSGEYYLQAQNSGQSVAQTVTFYIA
Ga0210396_10000034168	F029492	GGA	MTDGIKAPEQGDDDLRAVEFADEALEAAAEKSKPAFTLIGSPTVSVLVACCG
Ga0210396_10000034247	F018971	GGA	MSDSGSKFTGVEHVAPPLAPIGFDDILRDADVLLELMGKETLGVVAELANTLTVSAHQAGAQDIEEAASNVRRLALSHGPVVLTGAMRALTDAIARTGRAVAA
Ga0210396_1000003481	F028255	N/A	MTDDRYLALLLWTICVLTFACSIVALTEHPEWFGA