Scaffold Ga0210396_10000029

Overview

Basic Information

• Taxon OID: 3300021180
• Scaffold ID: Ga0210396_10000029
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 326307
• Total Scaffold Genes: 309
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 241 (77.99%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000036	Metagenome / Metatranscriptome	4352	Y
F001950	Metagenome / Metatranscriptome	613	Y
F003395	Metagenome / Metatranscriptome	489	Y
F014165	Metagenome / Metatranscriptome	265	Y
F014895	Metagenome / Metatranscriptome	259	Y
F018035	Metagenome / Metatranscriptome	237	Y
F026320	Metagenome / Metatranscriptome	198	Y
F027251	Metagenome / Metatranscriptome	195	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210396_10000029134	F000036	GAGG	MTTKESFWMACDSIEQLRAEYGPFQTRAEAEAEARKLGFGFLLRYEHVIDANENIQEVRCIFIELPMAHSTPTGPVVRRLHTRCATCGETSVHEEHWQAEVWADIHEFEHIRHRVRLFEQTRREGLKEIGDWRDQCA
Ga0210396_10000029197	F027251	GGAG	MRLHFHLRRHTTDGAIEVNPQSWFRLQHEAHDAAQAANSSRSEDDLFFDVIECTSDACERRRTPRKPSDAYWYSA
Ga0210396_10000029249	F003395	AGTAGG	MANPTSGGVTASTEMLAAKRHAGVHTPVIVGKMIIANQPMAYAA
Ga0210396_10000029271	F018035	GGAG	MKKTIAIAIAVLVIALILNASPARGSANPFVQGIVIEVQKQKVYFPDYAIGGSNPSDAPLTSRYYAYRVSVRVDCKTYIGRYETPFNYLPSEFTPNQPIQMRLTKHVMYFDLPNDPDMRMGIVRRSSDCGQTR
Ga0210396_1000002928	F014165	AGGA	MAVAKLKRPKEDQFEELADRIATEINERATRMTPEERARADSETKKIADRVQHRTP
Ga0210396_10000029281	F001950	AGGAG	MQMGWKYSLRRHFTFVRRLLFSSALMLLSVACLFGQTDESQATQHAGAGKVMVHTKFGGQIFGFDIDQNGTEGLLSEAKTLANGNILAAVETFDQKTGKILKVVDKLESQDDFVTMGIVGSSVGLVEREHVEGGFVVKRIFHTLNPLELNKFNGLWTPPIGSKHIIMPTGVSRSQGVAKVAVFDYDNSGNFIPLVFSSNVAANTFGPVVKITDSNNFGSVSPPIAYDSKTNVAVLGGGNGCFGCLPVIGVVDLVKGTFSEFTGIGFGFINGIAIDSADGIACTTTEDDASVEFYDLKKQTGFTVVLPNSGEQQFFSGADVEFDSLHKLFFIAQPNSSSSSSGSTIYVYDTKGNLKETLNGFNFSNTFNVIPAHIALHPTVRGGYVDGPDSGVTELQSFSY
Ga0210396_1000002929	F026320	N/A	VKKRDDLDDVIREESSRGKKRPVDTEAVNQQAERRNAVLRILRRGTREDLRALLKVWGYSTQEVEAALKEYDAALDQRSS
Ga0210396_1000002932	F014895	N/A	MKLCSVLLLVTVLVPNLLAAEKPYLTGKILDVEQKKTTRVLYYQVDTPITKDEPYYEVSVQVKDTIYVGDYSPRHASATLPDEWNVPQTEVRVRLDKHYMFLTRPAGTEVQFVIIKRMAAAPAQNSSEPPSPKK