Scaffold Ga0210396_10000018

Overview

Basic Information

• Taxon OID: 3300021180
• Scaffold ID: Ga0210396_10000018
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 416901
• Total Scaffold Genes: 379
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 289 (76.25%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000192	Metagenome / Metatranscriptome	1666	Y
F000323	Metagenome / Metatranscriptome	1300	Y
F008970	Metagenome / Metatranscriptome	325	Y
F018037	Metagenome / Metatranscriptome	237	Y
F019901	Metagenome / Metatranscriptome	227	Y
F035853	Metagenome / Metatranscriptome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210396_10000018146	F019901	GGAGG	VITSRLYEDKFMANVERGSCRFKAIQGADGKFVIRMEMFHQTVPLLADATVDFELLNGTTQDQARKLAESVNDRVTGVLITKP
Ga0210396_10000018147	F008970	N/A	MFSELNSPGSPEEKKLESSVLSDGAELDLLLPEAWNRPLPLRLLDHLRDTLSPEKLPPLRLTSRPVDVGMLAGDILSLPWYRTVFTNLGDVISPETLPPLQLESRPVDVGELIGDQMSHMWWTSLLRSLADAAAPERLPALQLTSAPMDDPSLTQGAMQLPRWSSVISTPKVFYPDKPKAAFVPTARVAAPPPKPDPAEVEFVHVLEADLKRDLRRSIFRQRLWVSLAVLEMLALIGTSLWWK
Ga0210396_10000018191	F018037	GGA	MIRRATIFRVTICIGLMFATVAGFAQPTAPQAANTITASLPLTTKSPEARRLVKEALDIYLDKVEQEQSIEILRKAVQVDPDFAMGHEFLAQISLDSAEQVGEQEKAFATRSHATTSEQLVIEWYQDAADHKLISAITKMNDVLNQYPHDKWVIWMTTWWLQSQAQYERVIAVYEHSGITDSPGLMNNIGYNYAYTRQFDKAFAMMDKYVAALPNDSNPQDSYAEILRLAGRFNQSIEHYRASLAINPEFYSSQFGIADTYSLMGDQVRARKEYEIGFQKFTLPELQQILWKTREAATYVRENDYEGAEHAFQAIADYAHSRQNSQAEADTYRQMAMCTQNPKEALVYLGKAEGATQDGKNALKIAITQELAQILRARVEVALKMGNKELAKSNLERLAAMSESSNDKLSELAYHGAAGAVLFSEHKYDQAISHLEEDTNNPLSLKLLAAAYQKIGYSAGAKRTNETLTNLNDPTLEQALVVPAFRKCSDTPSSCVSNTKSASLKK
Ga0210396_10000018225	F000323	AGGAG	MKRMWVFLLLLSSSLLAQERNPSATSQTKSKDAKGVVTLQGCVGRFSGDYILTKQDPAITYELQATGKIKLRHYLGQRVEVTGSEAPSMSTSSDALTKTGSASSVTLTITSIKTISQECTVH
Ga0210396_1000001827	F000192	AGGAGG	MAANQVVLYFDKQEDALLFTLAASSVMSADGPVHGRDAVVKVAEEICKASRITTEGVLNNSQLV
Ga0210396_1000001893	F035853	GGAGG	MFTGNLIDELISTVERAEKHAHKTADSQETKLPYWYVATEREGAFDSKLLGVA