Scaffold Ga0210396_10000012

Overview

Basic Information

• Taxon OID: 3300021180
• Scaffold ID: Ga0210396_10000012
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 505934
• Total Scaffold Genes: 469
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 276 (58.85%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000548	Metagenome / Metatranscriptome	1036	Y
F001289	Metagenome / Metatranscriptome	730	Y
F001412	Metagenome / Metatranscriptome	701	Y
F008094	Metagenome / Metatranscriptome	339	Y
F028922	Metagenome / Metatranscriptome	190	Y
F062016	Metagenome / Metatranscriptome	131	Y
F102977	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210396_100000121	F102977	N/A	MRAWQIFCVGVAVLVAVLLLPSYESVLAGLAAVVMVAAVVAGFLFRPRKDVFYLRTTLVVSEPDYPLAVEHDRVAVRVELVRLWLLFLPTFAAIAFLIVTSASGTTWRFSVLDRLLNVTTMSYPILYGIRVFLAIVVGLLWTWVSERWVLRDVDACSADSVSPTAGLLLYSFRDRSGDYYGGEAFPFALVRSPKLARIVFYNVSNPQRNRIAMGCLFHRPVIAGRGLTDLDESTVATHSVGVQPASESL
Ga0210396_1000001218	F001289	GAGG	MKNPYDVLRMKEQELIRVRKEMDALRLAARLLDAEDTAKGQGQPKLSRVVEMP
Ga0210396_10000012199	F000548	N/A	MAKVISSGPRWIGIPARVLAMTFLFTLLSFAVALLVSILGTVVYSQVKHVAPNLTFAYRHIAFPFAITAGGIVLALSLGMEIRNYRQRKALDGIERVS
Ga0210396_10000012236	F028922	AGGTGG	MSPLVPRLILKNFLFVVSCTLLVCVATPLALAQHAVVRSAGGVARPSAPPISHAPISSAPSIHAPISTPRISVAPSVGAFGMARFHPPRHPIRPFPPVLFLYESPFLFGGPFWGLNSCWAACDFWSWTLGTTTVSYAGPANYVSEVYEIPVPVYGEERPDLPQLFLKDGTILNVTDYWLVDDQLHFTMIEANGTTAVEHVIPFDALDLQTTVDANTRRGFRFMLRNEPVEQYLRDHPEGPPPVVTPRG
Ga0210396_10000012237	F008094	AGGAGG	MGTAARVFESKLRFRYFAAPLFCFSSVLIFSPSVLAQTNPPPGDPHEMVTRQPRTLTKPAERSAALDLLGRARQNFNLHDISSPYALKVSFETNGAAQMEGEWTMEELSDGAAHWRWSVQAGDSQLIRIGADGRVYGTDPAEPVPMRVQLVRSALHWPIMRNASAAAIRAADVERDGKSMTCLLTSASIPPNPAPRSWVEREYCVDPATGRLQMWSEAPGIYAVYDYSGATAFHGHTLPREITIFEDGRPAVQVRVENAEDAPDLDPNLFKPSPEMGSADESFTLASPNRFPMRVDPSDGPTSPFFQPVIVHAILDAQDGHVLDAETLQNSDRDLSRAALDVVSGGSFPPSGFQQEVFINVQFHMPAARMDGPPIFHSSVGWVILDHGRRIPPVRRPPPHPGK
Ga0210396_10000012283	F062016	GGAG	MKNFCKLATVMLITTMLMMTVLALSAFAQEPSPAIALANLTEGQGTLASTGGQSWDGLSEFVLIPGASLMGATSTTTALYIGFTGGSEADIGNMVLYETPRNGSTVLKVTKLTLGAISDPSINLTSTSVCPVQPVSATNPCIIRLDTVKLALSPLDDYYFTIYFTLDTNNEKISGLGQATSPGALSGWFLYGDQTRIGVKGALPTNENSDAAPYFLAYVTNQ
Ga0210396_10000012378	F001412	N/A	MPGQKPGESKEHMKLTNLAKTVVLGLAVLLASSAFASNKGTLVVGESFEVNGQQLKPGEYQVRWDGTGSTVEVSFLMNNKAVAKTSAKVVAVDKAYGADSAILDHSNGKATISELRFAGKKFALEIGPTEKAEMSGK