Scaffold Ga0210396_10000010

Overview

Basic Information

• Taxon OID: 3300021180
• Scaffold ID: Ga0210396_10000010
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 509016
• Total Scaffold Genes: 408
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 323 (79.17%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000323	Metagenome / Metatranscriptome	1300	Y
F000439	Metagenome / Metatranscriptome	1137	Y
F000737	Metagenome / Metatranscriptome	914	Y
F000840	Metagenome / Metatranscriptome	866	Y
F001920	Metagenome / Metatranscriptome	617	Y
F002860	Metagenome / Metatranscriptome	525	Y
F009977	Metagenome / Metatranscriptome	310	Y
F044181	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210396_10000010134	F001920	GGAGG	VLNWRGPLLAAGIFAAVFAVLLTMAHQNESKTSDMGSSLREDPYGARLLFDSYARAGYQVKRGQDEDSLSDQDASRTTAFFIGGYSPKGWTTNDGTLQAGEKLRGRLEDFLARGGRVVLVEPRWELKSQSQSWEVGTKWERVAQEHTPPWVSPDLRAMPADSEMMYLAADGASLQTDAQWTVLYSGTAGANAQADTSARVYMAMRRAGNGELIAASQESFLLNEAIKMHPNPVLLDFLAGGRPVIWVDETLHGLRQDEGVLWLVQRYRLQTALLLFWATLLALLWSMSGDLVRRPACDPGAQIVRHGEVAGVAARRLLQRSIAKERVVTECWEQFRRCSPQNAQAISADPHWGARLRTALARPPLAGYKELSQLIAERRAFAMRLAHVGRDAPDNSTLDR
Ga0210396_10000010196	F002860	GAGG	MIMPTPSEPKPEQNSSQAAEQVASAHRILKELQKTLGNHPELGEAITKLEMALATLAVKTGGLL
Ga0210396_10000010340	F000840	AGGA	MISLEEKIARTERLLHRLEEDQPYLHARLSPLGAEYRQSATAFADRVRAEAEAELQRLRAQRAEPYEGNVLHSAD
Ga0210396_1000001035	F000323	AGGAGG	MIRLFFVFLLLINFLVAQQTATDTPGQQNSKSFNGETKVEGCVSKSAGDFILMKHDPGMSYQLHATGKIHLSHYLGQQVEVIGKESPSMSTSSSSSARLGSPSVALTITSIKTIEKRCSA
Ga0210396_10000010359	F000737	N/A	MPSIASTQKGQRGSRVKLGGSILALVLLENGRQIRGRMSQLSVNGGLLSLENPLDESIRVTVVFHLGITSVRCRAQMLFPMWATQGCLQPFRFIELPEHSRVALNRELEALMRSGATQELEEAE
Ga0210396_10000010371	F044181	AGGA	MSAGAPLLFGLELAGPYMFLLAAVVGGGVAWGLIELNNIVRHAATLIAIAGIVMLVPPVSAATVAAQPKALAFGGLGIIVRVIVAWYLSRQEVAEAFHPSG
Ga0210396_10000010397	F009977	GGAGG	MNPTQWFSQHSISFTFILAYVPLIATVVTTAVSLILVRATLRYTEASDRSLALAREQFEREWAPELHLKLERVSARETKVSATNLAKISVLMQMLQLRKLSMAVPSLRCFLNEPLVGGTTWSDDLGKRFFACTGEDYAGQIAVSITFYAAGRMYRTDWFRFQVQVRDGQLLKLDPVNISARRVRALETQKGASMRRELVRDVVGSARERDEDAATAISRKR
Ga0210396_1000001098	F000439	AGGAGG	MEVVKGTGAGSELIHAQASSISAQQVVKAAHEELLQLMRQRAEIMKRIGTVKQTIAGLADIFGDQVLDDDLLELIDRKPNGRQPGFTKACRRVLMEVRRPVGAREVCLELERNAPAILARHKDPLASVTTVLNRLVDYGEARSLSNDRGRRVWEWVSEVEAPEVMTARRTA