Scaffold Ga0210396_10000008

Overview

Basic Information

• Taxon OID: 3300021180
• Scaffold ID: Ga0210396_10000008
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 525331
• Total Scaffold Genes: 452
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 344 (76.11%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000269	Metagenome / Metatranscriptome	1410	Y
F000323	Metagenome / Metatranscriptome	1300	Y
F000525	Metagenome / Metatranscriptome	1049	Y
F001355	Metagenome / Metatranscriptome	716	Y
F004553	Metagenome / Metatranscriptome	433	Y
F065975	Metagenome / Metatranscriptome	127	Y
F069199	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210396_10000008125	F004553	AGGAG	LNRRFGKTAVAALVAGALFMFAAAPLVHADDKDKCRHAIEKAEARLDHAIRDKGEHSREAEERRHDLNAERERCWTAYHGWWNGKENRWETEHNWDNDHPDNH
Ga0210396_10000008156	F001355	GGA	MDYSISKRAACCVCGLDTFRHKGWFLVVENRWLDRLKILTWHSSLAAQQDMRSVCCRQHLKTLIGHWLNQASLRLPPTYDPPLPIGSDPNLADVDLGRDAVGRLLGELAVHRESFSRVWSGSAAALESIVDALITIGDENQPHALEFHLSDQSRSTHGLSLQ
Ga0210396_10000008194	F000525	AGGA	LPTTKKFLLALILCATIACSPRDFLTRRLAADLISASDEFKSPQMFWLRQGMVSNKDFSSPESLVLQRRGWIQATEEKCPPDIDPPPCWDVVLTPLGVDTIRPLIATALPNNGPIGIQAARRELLGIAGISKAGNFADVEFTWRWVAINQVGAALYDSGVHYRSTVAFRSYDDGWRVLEKNMPSNQPLEDALRNAQPSAQ
Ga0210396_10000008199	F069199	N/A	MQKVTMPEKDKSLALREIAPADLEEVAGFIARISGSHTPLSTAVRRLAWILLENPAREPTDPFGWLLRAPSGEIAGCMCCAPQKFCFAQKTFTLMMANSFYVDDRYRGGGASIFLKYLQLGRRYPLFVSSANPTVAEMWQKLGGYPLGNSDHEVIGIQRWSPLLAENIYRQTASHRMAQCMAQFAAAFASPFLRAPRGLRCDTGEGQLLPLHTCEEAAGVCAEHHCDKITNCRDAAFLKWRYFSPVTPTARLFAFRPAADDKKFIIAVQLQNRGYKQQIRALQILDIWGEPAPKSYLSIASALAHEYRERIDMLVFRCLDQTQQQALIAHGFKFRRFAAPIAWCIDKHGLLPSKSWYFVPADGDMFL
Ga0210396_10000008450	F000323	AGGAGG	MSKLIFALLLCSSFLLGQNSNPISQGNSKDAKGQVTVQGCVGRSSGDYVLMKQNPTETLELQATNKIKLRHYLGQRVEVTGTKSPSMSTSSDAMARMGSPSPVTLTISSIKTVDKDCSERPAQ
Ga0210396_10000008451	F000269	GGA	MNSSTRRLSMCALTCSLALLLPLLCSASEQPTPKPTDLPATVIGHLALPQATGSQMLLQKEGGRHYLYVQQAGKQGFMVVDVTTPERPTLLRRTVESNQSTAGNLEMVSPDIAIAEAPERTSSTLTSSSHLTETVRILDLSDPHNPRTLETFNKVTSLLPDGGHGFIYLTNNDGLWILRYNRVSALIPAKKKQPCDSESEIMAMPPDCE
Ga0210396_1000000855	F065975	GGAGG	MRSAALIVAILWSSLAFAKDYEWKEGKVIDITTEKRGAVVVPIASLVGGPSTKTFYWIQTADTVYALGPVIGRRQLLNVTLHEPTKIAIDGKTAHIVDDYGQDRKMPIAEKVARPKSENP