Scaffold Ga0210396_10000007

Overview

Basic Information

• Taxon OID: 3300021180
• Scaffold ID: Ga0210396_10000007
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 536509
• Total Scaffold Genes: 479
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 360 (75.16%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000228	Metagenome / Metatranscriptome	1519	Y
F000260	Metagenome / Metatranscriptome	1431	Y
F002088	Metagenome / Metatranscriptome	595	Y
F007441	Metagenome / Metatranscriptome	351	Y
F007988	Metagenome / Metatranscriptome	341	Y
F012392	Metagenome / Metatranscriptome	281	Y
F014779	Metagenome / Metatranscriptome	260	Y
F021353	Metagenome / Metatranscriptome	219	Y
F023657	Metagenome / Metatranscriptome	209	Y
F024394	Metagenome / Metatranscriptome	206	Y
F050516	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210396_10000007124	F014779	AGGA	MDNPKMQECAICGEERSAEQVWFLVAESHWEDKLKVLEWQDELARRRGIYAACSGGHVEELVLHWMTTGSLDYPFATVGNKVGNRKQRLGWILPTVEEPDIRGARLIGELAVDRESVRRALRDDPDSLQVILDELLNALERESKGTGVRFESADAMCYGFPREI
Ga0210396_10000007127	F021353	AGGCGG	MIRLAHSTFESLVLLMRACYTEFNALVLTLALGGTLSPVPRKVVMYRDNSSTHARTEIRSPQTLYRGLYVRIARKLGVDPSYVSRVARGDRRSEEVESALGQALAEINQQLSRGSFPGNALARNATSANRLKGLMKQNRSRIREQWLTHSQSDANLRRVKIGDQKRTAPILPVLDETLKVMELSVKGMASATMKAAQQHGRLRQAQGFTAMGLVEEYNLVRRCVFGLALEHCRQMDAHVLIKDLTQFGEALDLQTQRALKDYLGSA
Ga0210396_10000007195	F012392	N/A	MFMRCQGYFGVFLVFLGMMLPASAAAQSDDVISLGDLARTLRQNKEPKEPAAPAIIDNDNLSQVIDDVEHFRLGLRPMFSFDGVGKNFRMTSPDGVCSLSFNANATALLTSPFVAQDLPQGELAKLDGPANILGDTIEVSVYNASSWSLREITVGLTIVRRDDTNVEDYGTAKLLPAVAQDNAPAQKRSDVTVLLHLKGTTAPFATTVYREKLDATLEDGQEWHWAIVEAKGVPPSTVASGSADQRASQ
Ga0210396_10000007202	F050516	GAG	MRYLQFVDIAFLSAVIGRGAKSLILVAFLSVAGLGQTLSIATLNDGPPSSFPENSAPSGLVPSGASSVAPSAVTTSLTTASLLPEAPSPHKFWDTKNRALFTTVAALSAADFALTRSILQNGGKELNPVTRLFSGSTSGLAANFAGETAGIIGLSYLFHKTGHHQLERLTPMLNIGASAFAVMYDLNHR
Ga0210396_10000007210	F007441	GAGG	MKRISVVSSVWLLALSFAAFAGEEEPRTFRGEISDSQCALNVHSLTQSHQEMLKSKSGDAGNTPASCSQFCIVHMGGKFVLASKGHVYHLDNQDLPRGFVGKKVKVRGFLDPKTEIIRVVNIEAE
Ga0210396_10000007237	F000228	GAG	MPRHPAKPDARRAQKTDAELKLYLVPCSCGTTFAVSENYDRQGTAWGRYLKCPNCGKRHDPKNRLLQLGFQRDGYWKVDGC
Ga0210396_1000000725	F024394	AGGGGG	MKDIHEVLRRKQARYAQLAKQIEMLQQAADKLREVAPLLAEIEDDDAAVLAEVDEQPTPAAKAASASSGGSAPAKPRGVAPRWP
Ga0210396_10000007270	F007988	AGGAG	MRKKMLLTLTVLALASVTALAANKDGIVTTKDGRMTIATKPTKSVTPAEPNDPSLVKIVDNLGTAYPKGEYWCCSGYTITGPTAISGFPEYWTAAAFTPTANHTITKIQVAVGYVEGTNGLTLALYNDASGVPGTQIKGFAVAGLPNFGSCCKVVTATDKAGIAVTAGTQYWIVMKTGNKTSNTYAAWNLNDTDQVDTATFAQYCSDDKGGSCGTNDTWTAFSTTIGLAFAVLGN
Ga0210396_10000007353	F002088	GGAGG	MMRDVQVAIGDICGDPTGLRVKVEDVDMYDYVHFSVIEASEFQEDEAEKGEMSQVAFVHRFTKLGKAFASRKAA
Ga0210396_10000007390	F000260	GAGG	MTWKSKLVLGILTAVAMFFLSLALPRGGSLREAQAALFPMTVGVWAIFVLLFVKLK
Ga0210396_1000000761	F023657	GGAGG	MATSGNRSSLAWGWRDLYVAALMEADNDRMSVRITEAERAMLERARALFQASGDNIQEEEALDDALYALRALKTCLEIHGGFATAT