NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210408_10037877

Scaffold Ga0210408_10037877


Overview

Basic Information
Taxon OID3300021178 Open in IMG/M
Scaffold IDGa0210408_10037877 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3794
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002850Metagenome / Metatranscriptome526Y
F004352Metagenome / Metatranscriptome442Y
F006575Metagenome / Metatranscriptome370Y

Sequences

Protein IDFamilyRBSSequence
Ga0210408_100378772F006575GGAGMTIESAAATSPYLSLRQAVRPAILAYRLLAGDQERAGKLAAECEDLLYLTRELLKAAGRARILSAVPGPRMLDESGGDRQAQLVEAYADAGLLWAKVVGSSLALAGELIERGDWEDVRALASLLAGAGEESAAAELRTQLGGAVWETHREQLRAISNNMPPAAIEQAINALRAVLREVPEEVPDRNREVNCFLPPLASSIHAIMKELQAEIPYHSRVEHIATGGVAKYPDIVKTSLDELAAEFEGICRRPGGKIT
Ga0210408_100378774F002850N/AVTGIHADIDALHGLHQALVRYRHAQRDVTARGEDQLAATRASLEAKASRWRAQLELGQADFSACQDRAARAAADDPAGGTVDCSGYARAVEQSGERLDQIRRWQQRIDAEASEFHVTASRFADLLENDLPRMEEHLVAIIASLEAARRVQAPAS
Ga0210408_100378775F004352N/AMTARPDQDGDQQLRLLGDAWDKAGEHWRDGTARQFGIAQLTPLLDESRGYLEALRKLLDTLEAAERDTEG
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