Scaffold Ga0210408_10030161

Overview

Basic Information

• Taxon OID: 3300021178
• Scaffold ID: Ga0210408_10030161
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4293
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000996	Metagenome / Metatranscriptome	810	Y
F002143	Metagenome / Metatranscriptome	590	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210408_100301612	F002143	N/A	MSAMLTNDSVPVGPWAAVGRFLTQYPTGGRAEALHLALQSLRDRIEPDRVLACELAWEMHIHGYWSQIRRSDGSAYESEETYFREVLSLASWRTAYKRLAIGRMLMGFEETERGQLRAAIAAVGLAKATVVVPAIERLREWKPWLEWAGQLPTIALQEKVSAALGALPRGHEPSPPGERFRRTVLAAMPDIEAMELVDRFFEVGTEVVGTPHPIGIFLAGCRECLGEWELQASRWSHPSPRGARDPLALDQTVCPHGQTADPNGDAQT
Ga0210408_100301614	F000996	AGGCGG	MSSLKRWRQVGQGQFQKWETPGQELEGTWQGIHEGRFGPLGTLEAAEGRLTFPLPVALRDRLAQVKPGALVLVRYTGLQTSNAGRTFKGFEVFVAEQDGWSEPMTSMPLPFGKEA