Scaffold Ga0210408_10006465

Overview

Basic Information

• Taxon OID: 3300021178
• Scaffold ID: Ga0210408_10006465
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10127
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001083	Metagenome / Metatranscriptome	783	Y
F012059	Metagenome / Metatranscriptome	284	Y
F018999	Metagenome / Metatranscriptome	232	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210408_100064654	F018999	N/A	MIHLKRQMAWLTVAALSTTLVAAPKRTQHRSKASTEEPLRGFRMLDAKLTLLTDQQDAVKTAFSPVQSGSGTIATPSQRRTTASRSMNVTAAGIERISGGLEQLYQRRHQPFGVQMFRIMRIKAQEVQRSVNAVAKAQTRGALDLAIKRLDERIVSLVVQFQAASGGYGAVRCSPGTWTCCEPKRSKDLLQSEQVACMWGCVAKTESCTGFLGPHIRRP
Ga0210408_100064657	F012059	GGAG	MRTQYLHLSAYPCDDCKRPVVAGWLAVRENDVSKETDIRQVGAVCLSCGHRQSKTEPGVTRQFPPVEWESTSLLGGSHLEAAFSEMLARAT
Ga0210408_100064659	F001083	GGAG	MDINQRQIALSLLESLREDLIYAHLNNGSRILDVADLRQYIYEQMGRIRTNAFVMDGLYGNDHGHAGNISKSNGHNGKAHPEEKSWPDRPAGDF