Scaffold Ga0210408_10005688

Overview

Basic Information

• Taxon OID: 3300021178
• Scaffold ID: Ga0210408_10005688
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10915
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (90.48%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013913	Metagenome	267	Y
F014639	Metagenome	261	Y
F020887	Metagenome	221	Y
F025336	Metagenome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210408_1000568816	F020887	GGAGG	MRTKITLCGEVAGTIWMPTEECTKAFHLELIRIPRDSKTRTYPGIAPHSIEITCLRDALLHLTNDGDFQSCAISWARLEVSHYFESEIRGSGTTMTHTRVWELRGKAPDSDCFTEEPNSSSNRS
Ga0210408_1000568818	F013913	GGAGG	MNLTPSAKGSFFAGIGLWCLIWAALFKADEIAELGGFERWVSSDRCLRWISKHRSTSLIGTELVNYTHTGLDPLGVTFALGGTLVNALMIYLLLPMRDGARRGGELRNL
Ga0210408_1000568819	F025336	AGGAGG	MFIALIAATEALLFSASGAKRHRARTQQVLMGNSLDPGRRLPFIDGYLRRKAAGASKPHVFVASKLAEVCRHAVNTKSFEYLLLHVIRTANLKRRSMRFISQRRITL
Ga0210408_1000568820	F014639	AGGAG	MLQLMQSNHAPASSESGFLDRKWRAILFYLEKRSFERKLESILGAAAGHEGNSLPVGDSRYQLLHVNANSLCAEFAKRWSLDIDLLKARIAGVAKLERLSVPPNTMNYTRLACFGLVTIPLLCFLMGAVAGLVNVGFHLVGGK