NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210408_10000462

Scaffold Ga0210408_10000462


Overview

Basic Information
Taxon OID3300021178 Open in IMG/M
Scaffold IDGa0210408_10000462 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)52241
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (77.36%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000624Metagenome / Metatranscriptome977Y
F000703Metagenome / Metatranscriptome928Y
F082251Metagenome113Y
F099605Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0210408_1000046223F082251N/AMSEGVLRCDGCGQPASSEHIAKRLQRLEWATRYRPVHIGTLLLGGVAPESDADFIYSPAGAWKGEAAMLLSAAGLITEGKAAEVTLAEFQRGGLFLTHVLDCPLEGGGVGGTQQLLANRLPAVLARIRRSLKPKRLAAVSMLLQEFLPAFHSGELPCAVLLDQGKPFALDGDAAGESGKHLREALASQGASARQGSA
Ga0210408_1000046246F000624AGGAMPHGSAWLATLVPVLVQFVIFLRWLHRRMRNEEINRAFVHDIATNHLPHIYTALQKIAAEQGITLDETPLVQFVDLNHRRRRE
Ga0210408_1000046248F099605GGAGMPNTTQSASWDFNPADPVRLAATFSFDTEDTQDATPVAAALAAIQARLATAVLSATQPDGATISITVTI
Ga0210408_1000046249F000703N/AMLVREYRQSDLAQLRAIHAAQGFDYPLPDLRNPLFVTKLVLSQGDDSLVSAQHAAPVQRDAEQPANIKTDESAGGAIVGAALLRLTAEAYLLLDPRAGTPRQRWQWLLALHAAAERDASQRGLEDVHAWLPPPIATKFGKHLTRLGWIRDDAWTPYCKKLAACQPQAG
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