Scaffold Ga0210408_10000058

Overview

Basic Information

• Taxon OID: 3300021178
• Scaffold ID: Ga0210408_10000058
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 170796
• Total Scaffold Genes: 160
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 123 (76.88%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024594	Metagenome / Metatranscriptome	205	Y
F030838	Metagenome / Metatranscriptome	184	Y
F040205	Metagenome / Metatranscriptome	162	Y
F062067	Metagenome / Metatranscriptome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210408_10000058131	F030838	AGGAGG	MSQSFTRDERLILVNPAHGPLLRKVMLRDRLVATFTDPDLVAVVLFCALGVLLTIALIHSLPGWVEVIATAQQFL
Ga0210408_10000058134	F040205	AGGAG	MGAFRPTTFSKKELAGLTPAKRRKLKKEIVRHLESHPGIRKILRSKAAPTLKKLKKA
Ga0210408_1000005821	F024594	AGGAG	MSATKLVVAMALLLSATSATLAQGPQCYGDRPYYDFYGAGWLDSELHLGIDCNVAPPASAHPRGRGRHAAADSRQRSIFSW
Ga0210408_1000005822	F062067	AGGAG	MKKLLTALAVLTAFATPAFAQYAPQDYQTAAPPSVQHKSSARQNGLHSFAMVPRSPAGSTLDDPSLTGGGSTGYNELIRTY