Scaffold Ga0210408_10000017

Overview

Basic Information

• Taxon OID: 3300021178
• Scaffold ID: Ga0210408_10000017
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 247997
• Total Scaffold Genes: 262
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 206 (78.63%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035007	Metagenome / Metatranscriptome	173	Y
F036811	Metagenome / Metatranscriptome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210408_10000017159	F035007	GGA	MSSRRRAPHLLSLGLALTSFALLTGCISSNEPILTDGQPLLGKEPHLLFYVLRDGTAREPSTKTFRWQDGRYVPVGRSAKDIGPFTLHAIAGPDLIVQTLSAGKPVEYGIARKLADGVYLVAVVDENDADEATQNKFCEKPPGTACRVNSREAVLAFARATAAKPHAGAGLALLMQH
Ga0210408_10000017188	F036811	GGAG	MKGLVFGIAVAALGLAAATPASADYAVVKFKDNGACRAWYDHTAKPWGTSQVLWVSVNSWDAAQTKGSYAMKHHWCKAWWK