NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210405_10211602

Scaffold Ga0210405_10211602


Overview

Basic Information
Taxon OID3300021171 Open in IMG/M
Scaffold IDGa0210405_10211602 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1537
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011502Metagenome / Metatranscriptome290Y
F035434Metagenome / Metatranscriptome172Y
F040835Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0210405_102116022F040835N/AMSTQTGATPAERAAEYLERIAWLTGAKQDDDGIYHLTAGRRHFLVDSNSVRVTSHRAESTCFSVVAYPDIPRAELIASALLQLKNNPRLFEKWRERQGDAFQANGQLFGDTYRLTRDET
Ga0210405_102116023F035434N/AMVRVALSLIPFLAVTLRWFVFTGMGREWLVGEVDALRPRQNGPLEQLLCILDPVGLTLVAGELENRADGADSVDRKYRAQRYLRRIVALTGATQMGCGYALHVGTTRFQVRDGYVRRVQDVANPKCRYEETCFYPVHNEMPKAEQIATALLQLKNNPALFDGWVAQNHVAFKADGQVFTRAQ
Ga0210405_102116024F011502N/AVNRVIAEYEAKTGAQPFDMTTGERIEKVTRRQNEVLMVHPIAGG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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