Scaffold Ga0210405_10010935

Overview

Basic Information

• Taxon OID: 3300021171
• Scaffold ID: Ga0210405_10010935
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7660
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000624	Metagenome / Metatranscriptome	977	Y
F000703	Metagenome / Metatranscriptome	928	Y
F000781	Metagenome / Metatranscriptome	895	Y
F002853	Metagenome / Metatranscriptome	526	Y
F073888	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210405_1001093510	F073888	N/A	MAACCATAGMVVLDKPMLTKYWIHLAELTIAILLAVTLYFSWQADRRDRAQLAAELAATKQLLAAADARQHDRDNQLAQTLATLAAEKRTIVTPAQIIRELPAQLPLPSPIVLQSAPALPNSPMPKSNAVIPAEDLKPLYDFTIDCKTCQAKLATAQSDLTDERQKTAALTHERDDALRIARGGSIWRRLTRAAKWFLIGAAAGAVAAKAAH
Ga0210405_100109352	F000781	AGG	VLTVAQLAPLKDRDPYLYETLVKIVSSVNATSQRAGVDPSTPAPAPSPIASVSVQASSGWFDISIADPSAARPGLFYFAESDTTPAFSAPRVYFMGASRNLYVQLGNQTLYWRAYSQYIGSLPSAPVSFGAPPTAVAGGGTTGPAPLPSSGSGVFPNGVPRGGNGFGLHPGSRIVRQTVL
Ga0210405_100109353	F000703	N/A	MLIREYTENDLDALRLIHSAQGFDYALPDLSNPLFVTKLVLADAEPVRQKENCQLEAGATKVFGAALLRLTAEAYLLLDPRAGTPRERWQWLLALHAAAERDAWQRGLEDVHAWLPPPIADKFGKRIARLGWLRDDAWTPYCKKLSAGK
Ga0210405_100109354	F002853	AGGAGG	MGRGAQSQTRQLTDQERANIDTLNQQFLGQQQQVGNLLLPQFQSILNNPGLSPADKAAVTGQSQGALSSAFDSLQQSAQNRLARTRNAAGFGELTDELARQKGIAEAGQAQQNQLAFTNTAFQRQMAALQGLSGLFGVDSNLLGRTLGIPAELLNARANASRSNGGFFSALGSGLGSTLGALPGAFF
Ga0210405_100109355	F000624	AGGA	MPASWFAILAAIVSGAVQFVIFLRWLHRRMRNDEIVSAFVRDIAANHLPHIYTALHEIAKRQGIELPETPMVRFVDLNGHRRNN