NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210405_10005264

Scaffold Ga0210405_10005264


Overview

Basic Information
Taxon OID3300021171 Open in IMG/M
Scaffold IDGa0210405_10005264 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11887
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (92.86%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002013Metagenome / Metatranscriptome604Y
F004921Metagenome418Y
F043881Metagenome / Metatranscriptome155N
F084587Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0210405_1000526410F043881AGGMHRNISRAYYALMAEHHRARAAHMKILARGDAMLERKLRRAKADDEGPIEEVVTNEERLSATQRRRVYGLSSYGRKIEKLVDALLKLQETSDALEREGTNKTGTVGVIAEI
Ga0210405_1000526411F004921AGGAMPKKKKPKAVMVDGIPMKPISPAEHRRLERRIKKKCEKLRQRYPEVHGKKVDWISHWHEEGYLSFNVRFTDGKNFSIRCSPTIVTNVVDFSDVKTSDSVIIRDYYHRRDD
Ga0210405_1000526412F002013AGGAMEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMEAYHKSMAGLERRRSMINLQFMLEMRKLEELDESYFNEEFNVWLSDEPLTNEEICGLMRGVERERKLDGKPPLVQFLPRGKRTKRAPKKAEGVHSSRKPTGPMPSVPGVESTVPKDAHA
Ga0210405_100052649F084587GGAGGMEQERDVLAVKDARKFEVHCKAGDAGELCVGTESLSVKVGQRIHRDGVEEIWHSLLIHCDAAEDGSLRVKVIVCHFDWEESRQIALIQSKPNHQEGTRTLIFDLEHKDV
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