NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210405_10003740

Scaffold Ga0210405_10003740


Overview

Basic Information
Taxon OID3300021171 Open in IMG/M
Scaffold IDGa0210405_10003740 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14672
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (94.12%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002417Metagenome / Metatranscriptome561Y
F029221Metagenome / Metatranscriptome189Y
F031940Metagenome / Metatranscriptome181Y

Sequences

Protein IDFamilyRBSSequence
Ga0210405_1000374011F029221GGGGGMRRISTSFEIILSATLLVLGLFMLYEGSSNKSASAPAMLIGGAVCFTLGVMTLFSAVRSILWHRRMIRHSLNHDLGSPAHGHNRG
Ga0210405_1000374012F031940GGAGMRLRFCILNVHGDVLDDGELYFLEAAQTLDAAKARVQSLAELWPGEYVIYDEATGERVSITAGDDTQT
Ga0210405_1000374017F002417GGAMASIFEKLWRLGPAAFVAKAILAAIVADGLLLAFILLRRTYRKRYFVKRDARVFELRQKWDALVSGEIPYETWRKKLFDRRIVESMALDAFEAAGPEES
Ga0210405_100037402F029221GGAGMRRISTLFEIILSATLLVLGLYMLYEGSSNKSASAPAVLIGGAVCFTLSVITLFSAVRSILWHRRMLRHSMPKHELDTSAPGHNPG

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