Scaffold Ga0210405_10003079

Overview

Basic Information

• Taxon OID: 3300021171
• Scaffold ID: Ga0210405_10003079
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16637
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011163	Metagenome / Metatranscriptome	294	Y
F023149	Metagenome / Metatranscriptome	211	Y
F032732	Metagenome / Metatranscriptome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210405_1000307915	F023149	GGAGG	MKKSYLTVALTLTCLLGVGISARAQDTEGVRVSIPFEFVAGGTRLPAGTYTVGRLSVEAFSSIAIRGYGNSAFVLPIAVDGTPVEQPKLSFEHVGDKYFLSEAETPGGVYTFAAPTAMVTLAQRKDHSPVSSSGGN
Ga0210405_100030796	F032732	AGGTGG	VKRTLGAATLLGLTIPLIQGSPAQGQRGGSSILQVVPTPNANSNSELLAASASSPNDIWAVGQSTIHFDGTTWTAFPAPMIKGDNNSFLQGWSLFLRLWPGRREM
Ga0210405_100030799	F011163	AGGAG	MGFGMEMLFVLMLGLLILGPKRLHTILVHVSQAKVELQNATRGLRSQLAAELDAARGPGKTGCPHVLVGDCELCSTFESVPEFSEPAENTLIGN