NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210405_10001941

Scaffold Ga0210405_10001941


Overview

Basic Information
Taxon OID3300021171 Open in IMG/M
Scaffold IDGa0210405_10001941 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22248
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (71.43%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000313Metagenome / Metatranscriptome1323Y
F001178Metagenome / Metatranscriptome756Y
F004288Metagenome / Metatranscriptome445Y
F049791Metagenome / Metatranscriptome146Y
F101592Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0210405_100019412F049791GGAGGMPQVQMKQSYIPMTISCNHCQQEQIVHMQAKTGFWQMAHQSVKCVRCEKHFEVMIPDAIVAGPFLPLNVSSTK
Ga0210405_100019413F000313AGGTGGMPKMIEQWLLFKYIEGQFTPLSKPFKRKAQAEKARSKLPERERRGVAVGVIRIVK
Ga0210405_100019414F001178AGGAGGMMKPNPDVANTAIDRILELSVEAHIRRRGTVRDSAKYHNLTGAIAAYGKVLGILVALQHLEEFHAISDQHDVPGCVAEVS
Ga0210405_100019415F101592GAGGMRNRFNEAVLRGLNRLVDVGWESDSDETIRQVEVEVHQEPTRHIVNVPKLLNWVKQDTMRPGEQTKKEKLRKLLGTR
Ga0210405_100019417F004288GGAGMNNSTQRGRPDQRLCRIEKRLPTLIFVYLASIRDRHTRERTLTENVSPHGVRVISKRSWRPGEETLITPSTWESPQVGRVIYCSPGAGSGYYLGIEFPDRTVEWSSA
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