NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210405_10001667

Scaffold Ga0210405_10001667


Overview

Basic Information
Taxon OID3300021171 Open in IMG/M
Scaffold IDGa0210405_10001667 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24670
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (88.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022248Metagenome / Metatranscriptome215Y
F025326Metagenome / Metatranscriptome202Y
F026812Metagenome / Metatranscriptome196Y
F050161Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0210405_1000166711F025326GGAGGMSLTMQQKRGLFWALGILIMATLTSVAWAQIHTALTHCFSLFGM
Ga0210405_1000166719F050161GGAGVQSFGKNHWKIFWGCFLFLRVLFAIGVLGVACSLSRPAFADADGALRETAQRLAERVAAIPGLHGALRLEWYPDEKWADGEGERWRKILRDAFEKRSLTLTEDSGAPALDIFAAETPTQVVLTAKMRVLDREEVRIVAVARALLPRGSLPVAPVRLERQMIYESPDRILDAFSFGNGPEGGLAILLYRNFEIVALRVDSKGFVKQSVSLNPANLEPSRSPRAEMTPRGNVVSVGLPGRTCEFSWESPADVKCHAEKPAAAEKPVGRGATLLSSPCDASSWKLLSSGSEPNAREVLQVVPAGELQESSAAVLSEFPGPIVGTNEEQNPSSALVIAQNVRTGNYEIYKITLACGN
Ga0210405_1000166720F026812GGAMAAVFVVWVMAIGAGIAQAQAPSCADLRAQKEKVYGFHLTQLNETQIDAKSKEIDAYWKQLQSAGPEGVSCLKEMLAAEKTDHIFQFDAASFLFQLDKSPESLNLVRDAIVQTDFQETDPANYLSLALELGQRGANIQSLAAKLLLFPNAVIHISEHSLDLDSDTAALFLYGSMDSTKASKALIAQLQAQEPFVRAAAAHLLAEEMSEEAFRTLSAWGGLAEVKEDYRRNDIQAVMKYQAPDPTEFASPKWTREQVLQIIAGLPHTRKEFDDVMSTRGAEFDRQMRAKKPTQEELAKAVAESEPIYGIADRTAFQNSAVATLKDEDFDTLREARRKALYNISDESLSEYLAYTQVMIRLLNRLDLYKDYRAH
Ga0210405_1000166723F022248GGAGMETMLGFAGVVVMTLLALFAALALQTALLHLTIRLMQPATADRRPVRVAVAHGTRMVARAFQMQR

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