NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210405_10001548

Scaffold Ga0210405_10001548


Overview

Basic Information
Taxon OID3300021171 Open in IMG/M
Scaffold IDGa0210405_10001548 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25916
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (82.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005419Metagenome / Metatranscriptome401Y
F011165Metagenome / Metatranscriptome294Y
F026317Metagenome / Metatranscriptome198Y
F070346Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0210405_1000154818F070346GGAGMNRPYSAMSIRWQRLLCFATWGVFIALASVSLPFLFDLVSRGIGWVTALFLHPDELWKECPRCL
Ga0210405_1000154823F005419AGGAGGMVPAGVTEAVGQGKSTEAGSSSRGRKVRAGRPGGVEVQRFFLAKTGGNNGVPEFSKEVPGEPEAMVESLKTGLSYFVVSEWRGIADFSGKKPQLGREAVRSAPKAG
Ga0210405_1000154826F026317GGCGGMGFFVRLLEAIAVLIPDCLTLGLVTLAFFNLYCIAKTIHVAGTLDTDSALRVSLAIAYLVTIAINIIGSLLTPARSSITTVLQSKSRVEQARRESSPATPRPQPVGHKNAVIES
Ga0210405_100015483F011165GAGMQVPWDRFRKAYEEYIRWQAFALWARVVVESEGSAPSWLEAILRKRCPGFTEEAARSNKPELLGLQLLPWVHGEVFGFAKQEGWLDALVFYGFRDTRSQGYWTYWEHCDSEWKQRRPAAIPTFVQWRRSALNWKLQGDVSYAVVAKAVEKLIAFETVSYWLRPLFQAAKLQLPAHIALELQQECPGLPEFMNRETSSGCENKSRSWRRLFNWGKGHVLSHAKKEGWLDCVLHQGGMHPRHVRLVDYAAHWCKSRQGNTALPHPSLSQWQKDMEGYVRASRK
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