NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210405_10001343

Scaffold Ga0210405_10001343


Overview

Basic Information
Taxon OID3300021171 Open in IMG/M
Scaffold IDGa0210405_10001343 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28307
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (77.78%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000159Metagenome / Metatranscriptome1863Y
F001597Metagenome / Metatranscriptome666Y
F001792Metagenome / Metatranscriptome633Y
F017458Metagenome / Metatranscriptome240Y

Sequences

Protein IDFamilyRBSSequence
Ga0210405_1000134311F001597GGAMIDETTKQAAQEYLAAKLTEEEQIYEATQNQALAVARAPLVWKHVKDSIFTKCSEWNAVTQEQTLTCKETAIGDLRIWCAARSKQMTVHYDSKKLLITLKNAGRLEHEKDVILHMEGYRTGPERADRDVHLVRNEQGVNIDLLIVGELRVLTGMERQRKA
Ga0210405_1000134323F017458AGGAGGMGKPGQKILRARERVLEILESENGCSAWYREKDANPAATFRTLSYEIDREGEEVVRESDGAGEMKLFRSPYVARVIQADGSYATITINMKGAFFSTTASVVKEQGDGGPWRLRGARALRVGPYAGETLYAQILALLHEFGHLVDLLPTDGGEQEAKSVENTNEVLRFCRGEIESKVRRNMLSARR
Ga0210405_1000134324F001792N/AMPQRKLFRFLLLAGLGLVAGFLALAIAVPIEPQVPAPLIALFSPGLKLAELLTPATGKSFAWTFGWFLRIAIVANAAFYYALFAVVAYLVDRRRSK
Ga0210405_100013434F000159AGGAMKTNSFVRGMALLAALAVVLPAFAKPFTKTITFSQTAKVGKSELKSGEYRLEIDGTKATVQKGKQVVAESEGRWEDRSAKSAYDSVLIGENGQVKEVRFAGQARVFVLSE
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