Scaffold Ga0210405_10001141

Overview

Basic Information

• Taxon OID: 3300021171
• Scaffold ID: Ga0210405_10001141
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31766
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (62.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000512	Metagenome / Metatranscriptome	1064	Y
F000696	Metagenome / Metatranscriptome	931	Y
F000703	Metagenome / Metatranscriptome	928	Y
F002853	Metagenome / Metatranscriptome	526	Y
F073888	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210405_1000114112	F000512	N/A	MILVVRETHDTPETVAHRLERAGGINRYGEANYRAMWGWNRLAWIGGKFEDRDEHGELLRERVELRWEPKYPAVNRWHIERWLPPETYGSPRAWYAQTIERDNGISIPALGPYPSRGEYEHCFTLESSRGEFVQLTATAAEHIARAIEWSRTFPHAKHRAGLYGREAHEDRSYEDWAFDQLDDAVPAFHKQPFVTVA
Ga0210405_1000114115	F000696	GAGG	MPVVGSSAYNTAGQITSLVRSLLNDSQGNLFTDTVLLPYANSAYRKLQRALGNAGGGGFIQDDALLIVTAVTQPDTSLQVSITDATAPPNQLPTDLLVPLKIWERRNGSTDDFLEMVDLTRHGGLPSRIQDVTLSVWEWRADGLYFLGATQDTQIRLRYLKAYPDFTDATSPVLVRNAQEAIAYATAALAGWARGSPLAEKWDDAAADAIEDLVSAAVRREQQSARRRRPFSARSGYTPF
Ga0210405_1000114120	F000703	N/A	VAAAGYTFFVGAQHAAPLQQPTLGEDEPRECTLRGAEEPAPDGIIGAALLRLTAEAYLLLDPRAGTPHERWQWLLALHAAAERDAWQRGLDDVHAWLPPPIAGKFGKRLARLGWLRDDAWTPYCKKLSEGK
Ga0210405_1000114121	F002853	AGGAGG	MGRGAQSQTRQLTDQERANIDALNQQFLGQQQQVGNLLLPQFQSILNSPGLSPADKAAVTGQSQGALSSAFDSLQQSAQNRLARTRNSAGFGELTDELARQKGIAEAGQAQQNQLAFTNTAFQRQMAALQGLSGLFGVDSNLLGRTLGIPAELLNVRANASRTNGGGFFSALGSGLGSTLGALPGAFF
Ga0210405_1000114124	F073888	AGGA	MPTKYLIHLAEVAIAILIALAVYFSWRADRRDRAQLAAELAATKQLLAAADARQHDRDNQLAQTLATLAAEKRTIVTPAQIIRELPAQLPLPSPIVLQSAPALPNSPTPKTNAVIPAEDLKPLYDFTIDCKTCQAKLATAQSDLADERQKTTALTHERDDALRIARGGNAWRRITRAAKWFLIGAAAGAVAAKAAR