Scaffold Ga0210405_10000902

Overview

Basic Information

• Taxon OID: 3300021171
• Scaffold ID: Ga0210405_10000902
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36589
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (77.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007503	Metagenome / Metatranscriptome	350	Y
F013208	Metagenome / Metatranscriptome	273	Y
F022717	Metagenome / Metatranscriptome	213	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210405_1000090214	F013208	N/A	MDVGIRERVEALRREIVEIQKLNLAYLQMTRPDFRAMNDHARRDQRLEEIMGELKSMTDWKKP
Ga0210405_1000090218	F007503	N/A	MLVDSNEGMEYMDKARELLSSLSAAEASNFARFDRERIASRSKALTETIVANSCLLVLTACRFGLIRYHGQVLEQEAAQSRQELSVRDLQLEKLTFALSNQARSKTSAIEANAGLLLQNYGGFLPRQGHEYAEQIKEASAQMEQLRQDLGGSPGSNSDEKAA
Ga0210405_100009026	F022717	GGAG	MENIILSVVGCLMLCASVFPQEQPRELRGGGHLLGETAGQFFSEGFLGDMLRACQGKDWKSVNQLSKNAGNASKTNAKDYCAKEMLAKQQTTSGTRLEYDGRGDAATMRADTFTFDGGHLVKINMVYLAPSANIEGYRPKSFGELFAGLREAYGPPSKSYSEPVLSAYGVKYDAHRAIWMGNQDVISIIEQPDEGGRTEIIAETLAEYNRAAQAPKTANPLR