Scaffold Ga0210405_10000683

Overview

Basic Information

• Taxon OID: 3300021171
• Scaffold ID: Ga0210405_10000683
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 43165
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (57.58%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027003	Metagenome / Metatranscriptome	196	Y
F035409	Metagenome / Metatranscriptome	172	Y
F059752	Metagenome / Metatranscriptome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210405_1000068313	F035409	AGGAGG	MRKIAIPGMLIAVAMLSVGIWAAAQDKPEVVEVTGILVKVSAVGVDSTGWEIHLPNEMNIGGRMTKAVEVDGDPHKFQKLENLRITVKGYLMRPSENRIVIKVQKIKE
Ga0210405_1000068322	F059752	AGGGGG	MTSTPFQPPIRKSLTLSLTWLLTTILFAVTVENIWLDAWLRVHFPDFPSLAPQPPSAIWILIFAAIGIVCVVLMVGQVLLMRRAGVSRNSKIVAGISVLIALLLSVTWFLVTSGITHAPG
Ga0210405_1000068328	F027003	GGAGG	MAIMHCRSIERRRTARAVVSIEMKVTGLGESQVPFKFSTRTISVSQHGGVIVLDAPLPVGQKFELLNEFNRRTATCRIVSVRASKDGKLQGAFELHCPEGNFWSMSFPAAGARPIKRVFVAKSVVR