NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210405_10000625

Scaffold Ga0210405_10000625


Overview

Basic Information
Taxon OID3300021171 Open in IMG/M
Scaffold IDGa0210405_10000625 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)45606
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (88.57%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000529Metagenome / Metatranscriptome1047Y
F010454Metagenome303Y

Sequences

Protein IDFamilyRBSSequence
Ga0210405_1000062512F000529GAGGMFSAMLLAISIVALSQFALYYWRAVLAGVAAQPVSDRVLVAAQVENGRLLPKHFQTLAGLHDLTPDLYPNRGGLGLVRVYYRVIEGLDALLGKSIPAFAAWSESERTICARYAAVQVDRRLQANLDLAASLRSC
Ga0210405_1000062535F010454GGAGMPEGSRHALLLASLLLAGLLPSSFGQNAPAAAAKKLPAGPAAPQSTHYPILILAFGNEPNWSLRIGQKGPERLDRPGYPPIPLEPAEVTHEAAADSWTYHAKDAATGAVVALHLTREACTDATNDTLTATPPPTGKYPFRAALEHAQIGSLQGCARIAAELFPKIKNQADDDEEDANTKKPPAPTITNFKPPVAVAYLNSAGNVVLSRGKTKKIAAPDGGELALSHDGKKLLFTRSDSKTSPDRTIVLYDFDTGKSLDLVHGLVRHAFWSPDDSRIAFLKAVDQSWQVWSFPASMPEAVALFSSQPVNSLHGWVGNHTILATDMLNAYWLSEDNQQLVVALKDIYGPTFQIMSSDTIRLHPLNSDLLLVSAHYLSAPAGAPVDSMGMAASFFLYELRSKRRVVLSPADQPGRAAEWSRDGLQVFFNGSDSAHRPGIYRIFWDATGLQRSLSGSSYVVGQ
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