NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0210405_10000333

Scaffold Ga0210405_10000333


Overview

Basic Information
Taxon OID3300021171 Open in IMG/M
Scaffold IDGa0210405_10000333 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)65603
Total Scaffold Genes67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)53 (79.10%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001959Metagenome / Metatranscriptome611Y
F003970Metagenome / Metatranscriptome459Y
F006398Metagenome / Metatranscriptome374Y
F022506Metagenome / Metatranscriptome214Y

Sequences

Protein IDFamilyRBSSequence
Ga0210405_1000033317F022506N/AMTDSIALRCDGCGQAASGEHIARRLRRLEWTTRYRPVHIHTLLLGAFSPLEENDFLYAPGGEFGGEAALLLDAAGISTAGKTRDAVHAEFQRAGFFLTHVLECPLEGEGNMPPDTRAALKERLAAVATRIRRSLKPKRVMVITEQLSPVVDDILALNLGCPVLLDGGKPFRLESRAGENGVERLREALAAPTGD
Ga0210405_1000033331F003970GGAGGLLSDHVFHFFSRTITITSHEQMLAIIVMVAAITAWAVQQFRRKRSIVLQRSVVSDQLVYELSRIADALDRIANRPADQVIAAASNRQTEESTGGRIPLSMFGR
Ga0210405_1000033354F006398GGAMPNSMRYCQTCRFELNKRGFKRHTLSVVHRKGKLIRAMLERDCITHAEIARRIGLTRERVRQLALQMGFADGRSRHAICRMERRRKEMAEFFVQAQKRGFAVELLGKKSAYINGKLCIQRQACWHDVGRSEYKYTCLSIRRPSAKFDICAWKLPDGRFLILPEKLTGFTQTTFNPEESDRLGTNSSSHYYRDYVERWSLLGRPRRAK
Ga0210405_100003338F001959GGAGGMKNLDSVFAAYMVGWTVFFVYYISVARRTAALRDDIERLKSSLNRGK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.