NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210405_10000295

Scaffold Ga0210405_10000295


Overview

Basic Information
Taxon OID3300021171 Open in IMG/M
Scaffold IDGa0210405_10000295 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)69653
Total Scaffold Genes76 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)56 (73.68%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000508Metagenome / Metatranscriptome1069Y
F005712Metagenome / Metatranscriptome392Y
F011163Metagenome / Metatranscriptome294Y
F038174Metagenome / Metatranscriptome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0210405_100002952F011163AGGAGVGFGMEMLFVLMLGLLVLGPKRLHTIMIHVAETKAELEKATRGLKSQLAAELDAGPKHGKTECSHVLVGDCEICSTFESVPEYPEPAEDALIGR
Ga0210405_1000029524F000508AGGGGGMMMNKVVASLRKEYSRLEKEMGKVGKALDALGHAGGKKLKSTGRTLSKDARRRIADAQRLRWAKVRKAAAKLVKT
Ga0210405_1000029551F038174AGGAGGMDRTRGLLFLLLFALSPLSLWSQDLPVRPKPGATVCVATVSNSSARSALLDRLTERLAKDLRDGKIKALAMDSSTTSEPKLHPTRENGEEAKSRDCDYMLLTQIVDPKTHPFDPQSPQISIGGRVPSVDASDPMGGSSGPVHRDNLQISFALFPMDRIKPVLDTVILAQPSGNASDSLLSAMDRESNRVASEMKKK
Ga0210405_1000029559F005712AGGAGMKTIRRFAYAAVLTLSALNFAPSLASAQDASGTFTLTHEVHWQKAIVPAGKYRFTLVTNGPSELLTLRKTSGGRASFILLVTDTDASEPSDLSRLVVVSRPSGSFVSTMQLPEFGLTLHFAVPSETREVARSIATSSATSGATSAASAAR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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