Scaffold Ga0210405_10000184

Overview

Basic Information

• Taxon OID: 3300021171
• Scaffold ID: Ga0210405_10000184
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 88678
• Total Scaffold Genes: 78
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 60 (76.92%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004121	Metagenome / Metatranscriptome	452	Y
F009088	Metagenome / Metatranscriptome	323	Y
F013787	Metagenome / Metatranscriptome	268	Y
F060154	Metagenome / Metatranscriptome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210405_1000018426	F009088	AGAAGG	MENSRVDELRAEVSQLLKKQSEVLESRTFGAATDTEILEFEIRREVIQEICHQLANATSV
Ga0210405_1000018427	F004121	GAG	VARRRKVLAAAALWGACAWFVSLDVDFLVTRLRNAPHWLLQGSRALFMGVSVAIGYAIYRKYLLELRTRSQKYAEIREQIRRLLADLLTTPDEDLIRHLHRTIKRIERLLKRYDPQAPHLDVEPKKPKAA
Ga0210405_100001846	F013787	GGAGG	MSAVGDGEFLRLLKKDIDYFERAVERFEDLIPRVCAPVQDQWRLQAQSRRNFSLELEILLEKAENCVSGSVSLDKNKKHPDSASW
Ga0210405_1000018478	F060154	N/A	AGNGKSGYTFAVTPGGTALTGWNFYTTAVPLSNVTGTKSFCAGDDGVVRTAAPGVITAVAGYAACLALTPMNN