NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210405_10000169

Scaffold Ga0210405_10000169


Overview

Basic Information
Taxon OID3300021171 Open in IMG/M
Scaffold IDGa0210405_10000169 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)92050
Total Scaffold Genes91 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)68 (74.73%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000655Metagenome / Metatranscriptome958Y
F001701Metagenome / Metatranscriptome649Y
F003988Metagenome / Metatranscriptome458Y
F005062Metagenome / Metatranscriptome413Y
F007287Metagenome / Metatranscriptome354Y
F021069Metagenome / Metatranscriptome220Y
F022762Metagenome / Metatranscriptome213Y

Sequences

Protein IDFamilyRBSSequence
Ga0210405_1000016912F003988N/AVKRLYTIARVKGGMKFTCSHCAHHVSTLDFDLRDGNLRTQAATAINRHATSVHHEPVMFSSLDTQQRIWRS
Ga0210405_1000016924F007287GGAGGMSGKSSIRLAVLYKTIAVCFLLVPFCAASDHWDYEETHDEVRDFVAGGMLHVRLSVGDVHIKRGDSNQIRLHYTVKSRRESRVKESHVDIEIRGHDAHIEFHAPTGGNTQFDVELEVPQTTSLDVHEKVGDLTVENLEGDKDLELGVGDIRVAAERVSYHLVRASAGIGDVNSDGYGETSGWLGKTLKYHGEGKYELRAHVGVGDINLEGK
Ga0210405_1000016926F022762N/AMEKLKKFELESPAPILDEEDEQAPAAIDEGIRDAKAGRTVPAEEVRKRLPKWITASSTRKGR
Ga0210405_1000016930F021069N/AMSMAVNWIELAQKMAQAARAGVAIERKRLQEILAERQRKQQSQSSSSSR
Ga0210405_1000016947F001701GGGGGMNSASSIKFLYAAYTATWLIHAFYIGSVVRRYSRLRKQMRDLGKTGKK
Ga0210405_1000016977F005062N/AMKGITGAYSDELRTRRCQILAVSHSQGYEVTERITEASPLKARFAGILYLAIIVVPALAQAPTIRVQSSLVLVDVISQDLNRGLLVRDFKKEDFRMFDNRHEVRIATFDTGADTRPITLWLVVICNERGIVGASAEFMGKESLFRPALDHLEKQDTVGIAHWCDNGETQLDLLPTTDRDSPIRVLAESLKPIPFEGGTFATDDVGEETFRKMIRLIIHDAYRRNPKPLPVIVFLHGDHTGQPRHELDKLVDDFLETSGVVFGIRDDQSAVLHFLIGEQAKILHYMAKHTGGQYFSARPSGYAAALEAILMQLHFRYELGFVPPAIDGKRHELKVELTKDAKAKHKQVRLKFRPEYIPIPEEPEWAH
Ga0210405_1000016987F000655N/AMIWWFLILGCSTLVVVCVAIALYVRLRRHLQAAHAARDQGSSAVEHERQSGDIEH
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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