NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210405_10000044

Scaffold Ga0210405_10000044


Overview

Basic Information
Taxon OID3300021171 Open in IMG/M
Scaffold IDGa0210405_10000044 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)157329
Total Scaffold Genes163 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)124 (76.07%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001893Metagenome / Metatranscriptome621Y
F017614Metagenome / Metatranscriptome239Y
F043068Metagenome / Metatranscriptome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0210405_10000044121F001893N/AMGTIKALLGFLAIILVIVACFEVVPPLMANYSFQDDLRNVALVDGANFQKTEEDVRNDVVRKAKDQNLPITPKQITVQRINTPGMSALYVAADYSVTVSLPGYSFDMHFNPNSGNK
Ga0210405_10000044124F043068GAGGMSTRQSIWLGESQGKSVHIYWELAEREVEDRRGMRAPIYLAVEGGNADEEVAVRLPKEIAMRLLMGIIPNWADEVGRVL
Ga0210405_10000044145F017614GGAGMYLQPVVRCKNPDCPMPSAARIRLPYPNPPKTGATPPDWPQDAWQLRLICRECDHWYVYEKEDVMWAPYSSALADHSGLDFQCIELECAEPSCGSRTRWHVLDNSQLSESELFEFVLRADPVVVCENGHSLSISGVASSSVEKVASV
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