Scaffold Ga0210405

Basic Information
Taxon OID	3300021171 Open in IMG/M
Scaffold ID	Ga0210405_10000002 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	488435
Total Scaffold Genes	432 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	223 (51.62%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

488435

Total Scaffold Genes

432 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

223 (51.62%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005690	Metagenome	393	Y
F017938	Metagenome	238	Y
F019196	Metagenome	231	Y
F019884	Metagenome	227	Y
F058467	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210405_10000002168	F017938	AGG	MSDQDDFSLRRRSKMIGFIVAEASAIGLLFLAGTFAVSSWLTNSTLAVSVDIVTIVAAVAVAIIPIAFFAVTPILPRRR
Ga0210405_10000002343	F005690	GAGG	MKCYDFCPAVSSTLKSKIRYNGQEYSSPAELPPEVRIAYEKALHDGTVKRKFVFNGEQFANEDTMPADVRKLCDDVMGVIENNGEVTIPNGKPEPLLTKREIVVVGLFAGGIIALVLARLVMG
Ga0210405_10000002361	F019884	GGAGG	MVTVFCLRSLPKTQDGFAISELIVSTSIFCSISLGLLMGFTSLERNYVATSDFSINHADEMRISDYMALDLRRAVSVQAAKNDTTIYIPAYYDQTSNPQTPALDGQGGVFYGASGSSVKVHYYLMAGTIYRQQDNAPALPLAVNVQDFTFDVTDAGKVVTTQITFNPTFNSGGASAAATTATAFYNTTLLRNSRTDIQSSVY
Ga0210405_10000002362	F019196	N/A	MRRHLTTEQTAFTLIECTIATAISALFLGSLFLLNSSAMDTIQMAREAACASQVLQQRIEAMRIANWHQVTDANWLLTNLLNTDAPGANQLTNLSETLTLVPYGSSTVGNTQLTRASGAVTIVANNSALLGENAIKIIWTVNYTAAPDRIISRQIVAILAKGGVAKW
Ga0210405_10000002417	F058467	N/A	MKPTPQISQNRQTGFPLMDYNFQATGDPKSGCSKKSPPFHKLSSEFFGEESYRDYVTNFLVFSVLGLITAWPIMSMVVAVTRLLQNS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210405_10000002

Overview

Ecosystem & Geography

Associated Families

Sequences