Scaffold Ga0210400_10024564

Overview

Basic Information

• Taxon OID: 3300021170
• Scaffold ID: Ga0210400_10024564
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4682
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000512	Metagenome / Metatranscriptome	1064	Y
F000739	Metagenome / Metatranscriptome	913	Y
F002750	Metagenome / Metatranscriptome	533	Y
F051385	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210400_100245643	F000739	GGAG	MMTRVEIWLKGLLAAAISGAAGGVLTGLAAVGIDPQHFNLQAGIGATFRIGAAAALINAVIGVAAYLQKSPLPEEGK
Ga0210400_100245644	F051385	GAGG	MYGYNWMRIACGLALLFSSVMVVAQSMLKNDMANHLYYGTSLIAVFGYLFLTSRNKEEERDSPWWW
Ga0210400_100245646	F000512	N/A	MIQVLRETHDTPESVAHSLELAGGINRFREPNYRAVWGWNRLAWIGGKFEERDPDTGSLLREVVELRLEPKYPALNRWHIEKWLPPETYGSPRAWWAQTIEVEGGRSIPALGPYPARGEYEHCFTLEGLRGEFVQLTATVAEHIARAIEWSRRHPRSAGKRALYDREQRRERAYDAWAYDLLDDAVPAFHRQPFVAVA
Ga0210400_100245647	F002750	GGA	LRDFVKQLLRGRYVAMLEEEVARLRAENRALTNSLLGTAGFPPVEYPEPVKPQALPRLRKRSWHQIQAWKAAEAASNELTK