NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210400_10007526

Scaffold Ga0210400_10007526


Overview

Basic Information
Taxon OID3300021170 Open in IMG/M
Scaffold IDGa0210400_10007526 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9013
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (93.75%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011259Metagenome / Metatranscriptome293Y
F011803Metagenome / Metatranscriptome287Y
F023966Metagenome / Metatranscriptome208Y
F037883Metagenome / Metatranscriptome167Y
F042033Metagenome / Metatranscriptome159Y
F044745Metagenome / Metatranscriptome154Y
F081702Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0210400_1000752611F011259AGGAGMSRQEDNRVLARTGARELTIDEVDQVSAAMQAHTNVCTAIMATATVTGPGDGDGCSDTDKDSNFI
Ga0210400_1000752612F037883AGGAGMSSQNDGNRVLNRMGARELTQEEIESVSANGPPCRLTFTHLPKGGSDEDTVCP
Ga0210400_100075263F023966AGGAGGMDQDNRVLTRRGARELSEQEVESVTGAFKTRRTLTPCFVDSKQQFLNGDQAIGECGP
Ga0210400_100075266F044745AGGAGMNDQNRVLARKGARDLNEQEVAMVSGGLRTLTACTLAAAGTLDGDTFHSECGSPDQ
Ga0210400_100075267F011803AGGAGMNDQNRVLIRKGARELTPKETDLIYGGFRTLSLCTSSPSPDGDQHVGEVGC
Ga0210400_100075268F042033AGGAGMNDQNRVLIRQGARELGAEEIERVGGGLHTETLCTVPTSTCPNRDGDAQIGECGPIC
Ga0210400_100075269F081702AGGAGMNDQTRVLIRKGARELSSEEVEQVGGGFNTLSITWGPNGRDGDGLLGEA
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Institute for Fundamental Biomedical Research
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