NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210400_10004242

Scaffold Ga0210400_10004242


Overview

Basic Information
Taxon OID3300021170 Open in IMG/M
Scaffold IDGa0210400_10004242 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12473
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (54.55%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005426Metagenome / Metatranscriptome401Y
F015193Metagenome / Metatranscriptome256Y
F032603Metagenome / Metatranscriptome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0210400_100042426F032603N/AMLLLLASFMVVVPSADLGTATGNHFFGRYQSGRDDYSPYGDNKEKCERSKWHVYR
Ga0210400_100042427F005426N/AMTEERKFAILFAATILAARKLIDLDPNKPNMAKGFFVDRAIEDAAFILERIDARWPTTVNSFSARQG
Ga0210400_100042428F015193AGGAGMPSYSSFMCPNCETHFRVIWPEPLPNYTDPCSKTKMKCPDCGEVTELYAYLIDTILQAPEPCIRSIEVLSISPRDPNPDPNARSHYWQKVWACREARYRLTYGPTK

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