Scaffold Ga0210400_10004242

Overview

Basic Information

• Taxon OID: 3300021170
• Scaffold ID: Ga0210400_10004242
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12473
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005426	Metagenome / Metatranscriptome	401	Y
F015193	Metagenome / Metatranscriptome	256	Y
F032603	Metagenome / Metatranscriptome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210400_100042426	F032603	N/A	MLLLLASFMVVVPSADLGTATGNHFFGRYQSGRDDYSPYGDNKEKCERSKWHVYR
Ga0210400_100042427	F005426	N/A	MTEERKFAILFAATILAARKLIDLDPNKPNMAKGFFVDRAIEDAAFILERIDARWPTTVNSFSARQG
Ga0210400_100042428	F015193	AGGAG	MPSYSSFMCPNCETHFRVIWPEPLPNYTDPCSKTKMKCPDCGEVTELYAYLIDTILQAPEPCIRSIEVLSISPRDPNPDPNARSHYWQKVWACREARYRLTYGPTK