Scaffold Ga0210400_10001783

Overview

Basic Information

• Taxon OID: 3300021170
• Scaffold ID: Ga0210400_10001783
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21013
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (64.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003832	Metagenome / Metatranscriptome	466	Y
F005268	Metagenome / Metatranscriptome	406	Y
F025325	Metagenome / Metatranscriptome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210400_100017835	F003832	N/A	MKSTAKLLRSEANWPPEEGEIISFRSSSGSETTILKEVRWGLVWRDFILEDGRVIPEHRISGCPHPQVWRKINEVTDNEREECEERLLSMAGAGMDPRQRDQPFWAELNQYLAYTYLRYKQAEFKVGDTER
Ga0210400_100017836	F005268	AGTAGG	VSRSDEETDEQQVWRVLSEAGLVEIRLDEFAEKIEDVKRVVIVRLRELLDFNTGIKERESAAYSLGTLKGLELKLLANAPKPPDPSEM
Ga0210400_100017837	F025325	AGGAGG	MLSDGPKRPKKTWEELTAAASVETDPEKLGMIVEEILAALEERQRAPATNRG