Scaffold Ga0210400_10001498

Overview

Basic Information

• Taxon OID: 3300021170
• Scaffold ID: Ga0210400_10001498
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23134
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (67.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000775	Metagenome / Metatranscriptome	896	Y
F000781	Metagenome / Metatranscriptome	895	Y
F007488	Metagenome / Metatranscriptome	350	Y
F009917	Metagenome	311	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210400_1000149822	F009917	AGGA	MGTSGWTYVVVVFSVGAQLVVFLRWMHRRMRDDEIQRVFVRDLALRHLPNIYRALNTIAEQQGIQLEETPMVNYVDLRNGGRHR
Ga0210400_1000149824	F007488	N/A	MKIRAYEESDLEELRAIHARQGFGYAFPDLGNPLFLTKLVLGREEGGKGIAGAALLRLTAEAYLLLDPDAGSPREKWQWLLGLHEATRRDALARGLEDVHAWLPPEIAGKFGKRLTRLGWIRDDQWTPYCKRLT
Ga0210400_1000149826	F000781	AGGCGG	MLTVAQLAPMKDRDPYLYETLVKIVSAVNATSANAGVDPANPSPAPPAIAALNVQAANGWFDLAISDPAVTRPGLFYFAESDVTPAFSAPRVYFLGASRNLYVQLGNQTLYWRAYSQYVGSLASAPVTFGSPATAVTGGGTSGPVPLPSSGSGALPNGLPRGGNGFGVVPGARVVKQTLL
Ga0210400_100014984	F000775	GGAGG	MKNLDSVFAAYIVGWGVFFVFYLTIAKRTSNLRAELDRLKNSLPRPK